• De novo transcriptome based on next-generation sequencing reveals candidate genes with sex-specific expression in Arapaima gigas (Schinz, 1822), an ancient Amazonian freshwater fish 

      Watanabe, Luciana; Gomes, Fátima; Vianez Júnior, João Lídio da Silva Gonçalves; Nunes, Márcio Roberto Teixeira; Cardoso, Jedson Ferreira; Lima, Clayton; Schneider, Horacio; Sampaio, Iracilda (Public Library of Science, 2018)
      BACKGROUND: The Arapaima (Arapaima gigas) is one of the world's largest freshwater bony fish, and is found in the rivers of the Amazon basin. This species is a potential aquaculture resource, although reproductive management ...
    • Differential expression analysis and profiling of hepatic miRNA and isomiRNA in dengue hemorrhagic fever 

      Oliveira, Layanna Freitas de; Andrade, Amanda Araújo Serrão de; Pagliari, Carla; Carvalho, Leda Viegas de; Silveira, Taiana S; Cardoso, Jedson Ferreira; Silva, André Luiz Teles e; Vasconcelos, Janaína Mota de; Moreira-Nunes, Caroline Aquino; Burbano, Rommel Mario Rodríguez; Nunes, Márcio Roberto Teixeira; Santos, Eduardo José Melo dos; Vianez Júnior, João Lídio da Silva Gonçalves (Scientific Reports, 2021)
      Dengue virus causes dengue hemorrhagic fever (DHF) and has been associated to fatal cases worldwide. The liver is one of the most important target tissues in severe cases, due to its intense viral replication and metabolic ...
    • Discovery and genome sequencing of a new virus related to members of the family Tymoviridae, isolated from mosquitoes of the genus Mansonia in Brazil 

      Miranda, Keissy Karoline Pinheiro; Galvão, Glennda Juscely Pereira; Araújo, Pedro Arthur da Silva; Ribeiro, Ana Claudia da Silva; Silva, Sandro Patroca da; Lemos, Poliana da Silva; Martins, Lívia Caricio; Nunes, Márcio Roberto Teixeira; Vasconcelos, Pedro Fernando da Costa; Ferreira, Vânia da Costa; Costa, Fábio Medeiros da; Roque, Rosemary Aparecida; Tadei, Wanderli Pedro; Cruz, Ana Cecília Ribeiro; Carvalho, Valéria Lima (Springer, 2022)
      A new virus, named Mutum virus, related to members of the family Tymoviridae, was isolated from mosquitoes (Mansonia spp.) in clone C6/36 cells, and its complete genome was sequenced. Its genome is 6494 nt in size with an ...
    • Discovery of novel anelloviruses in small mammals expands the host range and diversity of the Anelloviridae 

      Souza, William Marciel de; Fumagalli, Marcílio Jorge; Araujo, Jansen de; Santos Jr, Gilberto Sabino; Maia, Felipe Gonçalves Motta; Romeiro, Marilia Farignoli; Modha, Sejal; Nardi, Marcello Schiavo; Queiroz, Luzia Helena; Durigon, Edison Luiz; Nunes, Márcio Roberto Teixeira; Murcia, Pablo Ramiro; Figueiredo, Luiz Tadeu Moraes (Elsevier, 2018)
      The Anelloviridae comprises single-stranded DNA viruses currently grouped in sixty-eight species classified in twelve genera. They have been found in many vertebrate hosts including primates. In this study, we describe the ...
    • Diversity of metallo-β-lactamase-encoding genes found in distinct species of Acinetobacter isolated from the Brazilian Amazon Region 

      Brasiliense, Danielle Muruci; Cayô, Rodrigo; Streling, Ana Paula; Nodari, Carolina S; Barata, Rafael R; Lemos, Poliana S; Massafra, Janaina M; Correa, Yan; Magalhães, Igor; Gales, Ana C; Sodré, Roberta (Instituto Oswaldo Cruz, 2019)
      BACKGROUND: The multidrug resistance (MDR) phenotype is frequently observed in Acinetobacter baumannii, the most clinically relevant pathogenic species of its genus; recently, other species belonging to the A. calcoaceticus-A. ...
    • Draft genome sequence of Alkalinema sp. Strain CACIAM 70d, a cyanobacterium isolated from an Amazonian freshwater environment 

      Lima, Alex Ranieri Jerônimo; Castro, Wendel de Oliveira; Moraes, Pablo Henrique Gonçalves; Siqueira, Andrei Santos; Aguiar, Délia Cristina Figueira; Lima, Clayton Pereira Silva de; Vianez Júnior, João Lídio da Silva Gonçalves; Nunes, Márcio Roberto Teixeira; Dall’Agnol, Leonardo Teixeira; Gonçalves, Evonnildo Costa (American Society for Microbiology, 2017)
      In order to increase the genomic data of cyanobacterial strains isolated in Brazil, we hereby present the draft genome sequence of the Alkalinema sp. strain CACIAM 70d, isolated from an Amazonian freshwater environment. ...
    • Draft genome sequence of Flavihumibacter sp. Strain CACIAM 22H1, a heterotrophic bacterium associated with cyanobacteria 

      Moraes, Pablo Henrique Gonçalves; Lima, Alex Ranieri Jerônimo; Siqueira, Andrei Santos; Dall’Agnol, Leonardo Teixeira; Baraúna, Anna Rafaella Ferreira; Aguiar, Délia Cristina Figueira; Fuzii, Hellen Thais; Albuquerque, Keila Cristina Ferreira; Lima, Clayton Pereira Silva de; Nunes, Márcio Roberto Teixeira; Vianez Júnior, João Lídio da Silva Gonçalves (American Society for Microbiology, 2016)
      Here, we present a draft genome and annotation of Flavihumibacter sp. CACIAM 22H1, isolated from Bolonha Lake, Brazil, which will provide further insight into the production of substances of biotechnological interest.
    • Draft genome sequence of Limnobacter sp. Strain CACIAM 66H1, a heterotrophic bacterium associated with cyanobacteria 

      Silva, Fábio Daniel Florêncio da; Lima, Alex Ranieri Jerônimo; Moraes, Pablo Henrique Gonçalves; Siqueira, Andrei Santos; Dall’Agnol, Leonardo Teixeira; Baraúna, Anna Rafaella Ferreira; Martins, Luisa Caricio; Oliveira, Karol Guimarães; Lima, Clayton Pereira Silva de; Nunes, Márcio Roberto Teixeira; Vianez Júnior, João Lídio da Silva Gonçalves; Gonçalves, Evonnildo Costa (American Society for Microbiology, 2016)
      Ecological interactions between cyanobacteria and heterotrophic prokaryotes are poorly known. To improve the genomic studies of heterotrophic bacterium-cyanobacterium associations, the draft genome sequence (3.2 Mbp) of ...
    • Draft genome sequence of Microcystis aeruginosa CACIAM 03, a cyanobacterium isolated from an Amazonian freshwater environment 

      Castro, Wendel Oliveira; Lima, Alex Ranieri Jerônimo; Moraes, Pablo Henrique Gonçalves; Siqueira, Andrei Santos; Aguiar, Délia Cristina Figueira; Baraúna, Anna Rafaella Ferreira; Martins, Luisa Caricio; Fuzii, Hellen Thais; Lima, Clayton Pereira Silva de; Vianez Júnior, João Lídio da Silva Gonçalves; Nunes, Márcio Roberto Teixeira; Dall’Agnol, Leonardo Teixeira; Gonçalves, Evonnildo Costa (American Society for Microbiology, 2016)
      Given its toxigenic potential, Microcystis aeruginosa is an important bloom-forming cyanobacterium. Here, we present a draft genome and annotation of the strain CACIAM 03, which was isolated from an Amazonian freshwater ...
    • Emergence of new insect-restrictive viruses in the Amazon Region 

      Nunes, Márcio Roberto Teixeira; Silva, Sandro Patroca da; Carvalho, Valéria Lima; Vasconcelos, Janaina Mota de; Silva, Daisy Elaine Andrade da; Oliveira, Layanna Freitas de; Nunes Neto, Joaquim Pinto; Rodrigues, Sueli Guerreiro; Azevedo, Raimunda do Socorro da Silva; Monteiro, Hamilton A. O; Cardoso, Jedson Ferreira; Guzman, Hilda; Tesh, Robert; Vasconcelos, Pedro Fernando da Costa; Vianez Júnior, João Lídio da Silva Gonçalves; Martins, Lívia Caricio (American Society for Microbiology, 2015)
      The complete genome was determined for 12 viruses isolated from 8 different pools of mosquitoes (Culex sp. and Psorophora ferox) collected at Brejeira farm, Canaan dos Carajas, Para state in northern Brazil. Eight of the ...
    • Establishment of a minigenome system for Oropouche virus reveals the S genome segment to be significantly longer than reported previously 

      Acrani, Gustavo Olszanski; Tilston-Lunel, Natasha L; Spiegel, Martin; Weidmann, Manfred; Dilcher, Meik; Silva, Daisy Elaine Andrade da; Nunes, Márcio Roberto Teixeira; Elliott, Richard M (Microbiology Society, 2015)
      Oropouche virus (OROV) is a medically important orthobunyavirus, which causes frequent outbreaks of a febrile illness in the northern parts of Brazil. However, despite being the cause of an estimated half a million human ...
    • Evaluation of drug susceptibility profile of mycobacterium tuberculosis lineage 1 from brazil based on whole genome sequencing and phenotypic methods 

      Guimarães, Arthur Emil dos Santos; Sharma, Abhinav; Furlaneto, Ismari Perini; Rutaihwa, Liliana; Cardoso, Jedson Ferreira; Conceição, Marília Lima da; Spinassé, Lizânia Borges; Machado, Edson; Lopes, Maria Luiza; Duarte, Rafael Silva; Gagneux, Sebastien; Suffys, Philip Noel; Lima, Karla Valéria Batista; Conceição, Emilyn Costa (Instituto Oswaldo Cruz, 2020)
      BACKGROUND The evaluation of procedures for drug susceptibility prediction of Mycobacterium tuberculosis based on genomic data against the conventional reference method test based on culture is realistic considering the ...
    • Evolutionary and molecular analysis of complete genome sequences of norovirus from Brazil: emerging recombinant strain GII.P16/GII.4 

      Hernandez, Juliana Merces; Silva, Luciana Damascena da; Sousa Júnior, Edivaldo Costa; Cardoso, Jedson Ferreira; Reymão, Tammy Kathlyn Amaral; Portela, Ana Caroline Rodrigues; Lima, Clayton Pereira Silva de; Teixeira, Dielle Monteiro; Lucena, Maria Silvia Souza; Nunes, Márcio Roberto Teixeira; Gabbay, Yvone Benchimol (Frontiers Media, 2020)
      Noroviruses (NoVs) are enteric viruses that cause acute gastroenteritis, and the pandemic GII.4 genotype is spreading and evolving rapidly. The recombinant GII.P16/GII.4_Sydney strain emerged in 2016, replacing ...
    • Evolutionary dynamics of Oropouche virus in South America 

      Gutierrez, Bernardo; Wise, Emma L; Pullan, Steven T; Logue, Christopher H; Bowden, Thomas A; Escalera-Zamudio, Marina; Trueba, Gabriel; Nunes, Márcio Roberto Teixeira; Faria, Nuno Rodrigues; Pybus, Oliver G (American Society for Microbiology, 2020)
      The Amazon basin is home to numerous arthropod-borne viral pathogens that cause febrile disease in humans. Among these, Oropouche orthobunyavirus (OROV) is a relatively understudied member of the genus Orthobunyavirus, ...
    • Fatal outcome of chikungunya virus infection in Brazil 

      Lima, Shirlene Telmos Silva de; Souza, William Marciel de; Cavalcante, John Washington; Candido, Darlan da Silva; Fumagalli, Marcilio Jorge; Carrera, Jean-Paul; Mello, Leda Maria Simões; Araújo, Fernanda Montenegro de Carvalho; Ramalho, Izabel Leticia Cavalcante; Barreto, Francisca Kalline de Almeida; Braga, Deborah Nunes de Melo; Simião, Adriana Rocha; Silva, Mayara Jane Miranda da; Oliveira, Rhaquel de Morais Alves Barbosa; Lima, Clayton Pereira Silva de; Lins, Camila de Sousa; Barata, Rafael Ribeiro; Melo, Marcelo Nunes Pereira; Souza, Michel Platini Caldas de; Franco, Luciano Monteiro; Távora, Fábio Rocha Fernandes; Lemos, Daniele Rocha Queiroz; Alencar, Carlos Henrique Morais de; Jesus, Ronaldo de; Fonseca, Vagner de Souza; Dutra, Leonardo Hermes; Abreu, André Luiz de; Araújo, Emerson Luiz Lima; Freitas, André Ricardo Ribas; Vianez Júnior, João Lídio da Silva Gonçalves; Pybus, Oliver G; Figueiredo, Luiz Tadeu Moraes; Faria, Nuno Rodrigues; Nunes, Márcio Roberto Teixeira; Cavalcanti, Luciano Pamplona de Góes; Miyajima, Fabio (Oxford University Press, 2021)
      BACKGROUND: Chikungunya virus (CHIKV) emerged in the Americas in 2013 and has caused approximately 2.1 million cases and >600 deaths. A retrospective investigation was undertaken to describe clinical, epidemiological, and ...
    • Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil 

      Adelino, Talita Émile Ribeiro; Giovanetti, Marta; Fonseca, Vagner; Xavier, Joilson; Abreu, Álvaro Salgado de; Nascimento, Valdinete Alves do; Demarchi, Luiz Henrique Ferraz; Oliveira, Marluce Aparecida Assunção; Silva, Vinícius Lemos da; Mello, Arabela Leal e Silva de; Cunha, Gabriel Muricy; Santos, Roselene Hans; Oliveira, Elaine Cristina de; Chamon Júnior, Jorge Antônio; Iani, Felipe Campos de Melo; Filippis, Ana Maria Bispo de; Abreu, André Luiz de; Jesus, Ronaldo de; Albuquerque, Carlos Frederico Campelo de; Rico, Jairo Mendez; Said, Rodrigo Fabiano do Carmo; Silva, Joscélio Aguiar; Moura, Noely Fabiana Oliveira de; Leite, Priscila; Frutuoso, Lívia Carla Vinhal; Haddad, Simone Kashima; Martínez, Alexander; Barreto, Fernanda Khouri; Vazquez, Cynthia Carolina; Cunha, Rivaldo Venâncio da; Araújo, Emerson Luiz Lima; Tosta, Stephane Fraga de Oliveira; Fabri, Allison de Araújo; Chalhoub, Flávia Lowen Levy; Lemos, Poliana da Silva; Nogueira, Fernanda de Bruycker; Lichs, Gislene Garcia de Castro; Zardin, Marina Castilho Souza Umaki; Segovia, Fátima María Cardozo; Gonçalves, Crhistinne Cavalheiro Maymone; Grillo, Zoraida Del Carmen Fernandez; Slavov, Svetoslav Nanev; Pereira, Luiz Augusto; Mendonça, Ana Flávia; Pereira, Felicidade Mota; Magalhães, Jurandy Júnior Ferraz de; Santos Júnior, Agenor de Castro Moreira dos; Lima, Maricélia Maia de; Nogueira, Rita Maria Ribeiro; Góes Neto, Aristóteles; Azevedo, Vasco Ariston de Carvalho; Ramalho, Dario Brock; Oliveira, Wanderson Kleber; Macario, Eduardo Marques; Medeiros, Arnaldo Correia de; Pimentel, Victor; Holmes, Edward C; Oliveira, Tulio de; Lourenço, José; Alcantara, Luiz Carlos Júnior; Cerqueira, Erenilde Marques de; Graf, Tiago; Ramalho, Walter; Navegantes, Wildo; Reis, Renato Barbosa; Duarte, Clara Guerra; Pereira, Maria Alves; Silva, Paulo Eduardo de Souza da; Souza, Raoni Almeida de; Pauvolid-Corrêa, Alex; Paiva, Anne Aline Pereira de; Fritsch, Hegger Machado; Mares-Guia, Maria Angélica; Torres, Maria Celeste; Lima, Maurício Teixeira; Sequeira, Patrícia; Marques, William de Almeida; Jesus, Jorlan Fernandes de; Naveca, Felipe Gomes; Silva, Alessandra Lima; Pinto, Anne Cybelle; Jaiswal, Arun Kumar; Lopes, Élisson Nogueira; Costa, Francielly Morais Rodrigues da; Peixoto, Gabriel Quintanilha; Soares, Gilson Carlos; Fonseca, Paula Luize Camargos; Souza, Renan Pedra de; Kato, Rodrigo Bentes; Santos, Rodrigo Profeta Silveira; Tiwari, Sandeep; Nogueira, Wylerson Guimarães; Santos, Beatriz Senra Álvares da Silva; Bueno, Bruna Lopes; Siqueira, Isadora Cristina de; Valle, Lourdes Farre; Borba, Melina Mosquera Navarro; Mazzetto, Alix Sandra; Aguiar, Francisco de Assis Araújo; Gomes, Irenio da Silva; Abrantes, Jayra Juliana Paiva Alves; Watanabe, Luiz Takao; Rego, Marta Ferreira da Silva; Nardy, Vanessa Brandão; Aguiar, Shirlei Ferreira de; Santos, Fabiana Cristina Pereira dos; Queiroz, Alice Louize Nunes; Nunes, Bruno Tardelli Diniz; Martins, Lívia Caricio; Nunes, Márcio Roberto Teixeira; Salles, Flávia Cristina da Silva; Claro, Ingra Morales; Jesus, Jaqueline Goes de; Cândido, Darlan da Silva; Fabbri, Cintia Marcela; González, Claudia; Saéz, Lisseth; Chen-Germán, María; Barrera, Jaime Lagos; Ramírez-González, José Ernesto; Campos, Josefina; Faller, Noelia Morel; Villalobos, Marta Eugenia Víquez; Kaslin, Roberto; Cisneros, Silvia Paola Salgado; Aburjaile, Flávia Figueira; Amaral, Carolina Dourado; Freire, Danielle Bandeira Costa de Sousa; Cruz, Laura Nogueira; Mattos, Daniel; Landeira, Leandro Ferreira Lopes; Menezes, Mariane Talon de; Orioli, Ieda Maria; Ferraz, Ariane Coelho; Oliveira, Daiane Teixeira de; Reis, Alexandre Barbosa; Cota, Renata Guerra de Sá; Bezerra, Rafael dos Santos; Falcão, Melissa Barreto; Carvalho, Rodrigo Dias de Oliveira (Nature Research, 2021)
      Brazil experienced a large dengue virus (DENV) epidemic in 2019, highlighting a continuous struggle with effective control and public health preparedness. Using Oxford Nanopore sequencing, we led field and classroom ...
    • First isolation of Bunyamwera virus (Bunyaviridae family) from horses with neurological disease and an abortion in Argentina 

      Tauro, Laura B; Rivarola, Maria E; Lucca, Eduardo; Mariño, Betina; Mazzini, Rubén; Cardoso, Jedson Ferreira; Barrandeguy, María Edith; Nunes, Márcio Roberto Teixeira; Contigiani, Marta S (Elsevier, 2015)
      Bunyamwera virus (BUNV) is the prototype virus for both the Orthobunyavirus genus and the Bunyaviridae family. Different strains of BUNV have been associated with clinical diseases in domestic animals, mainly ruminants. ...
    • First new world primate papillomavirus identification in the Atlantic Forest, Brazil: Alouatta guariba papillomavirus 1 

      Silvestre, Rodrigo Vellasco Duarte; Souza, Alex Junior Souza de; Sousa Júnior, Edivaldo Costa; Silva, Allan Kaio; Mello, Wyller Alencar de; Nunes, Márcio Roberto Teixeira; Vianez Júnior, João Lídio da Silva Gonçalves; Cardoso, Jedson Ferreira; Vasconcelos, Janaina Mota de; Oliveira, Layanna Freitas de; Silva, Sandro Patroca da; Silva, Adriana Marques J. da; Fries, Brigida Gomes; Summa, Maria Eugênia L; Sá, Lilian Rose Marques de (American Society for Microbiology, 2016)
      We report here the complete genome sequence of the first papillomavirus detected in a New World primate, howler monkey, Alouatta guariba clamitans papillomavirus 1 (AgPV1), from the Atlantic Forest in São Paulo State, Brazil.
    • Full-length genomic and molecular characterization of Canine parvovirus in dogs from North of Brazil. 

      Silva, S. P.; Silva, L. N. P. P.; Rodrigues, E. D. L.; Cardoso, J. F.; Tavares Neto, Fernando; Souza, W. M.; Santos, C. M. P.; Martins, F. M. S.; Jesus, I. S.; Brito, T. C.; Moura, T. P. C.; Nunes, Márcio Roberto Teixeira; Casseb, Lívia Medeiros Neves; Silva Filho, E.; Casseb, A. R. (2017)
      With the objective of characterizing Canine parvovirus (CPV) from some suspected fecal samples of dogs collected from the Veterinarian Hospital in Belém city, five positive samples were found by PCR assay and an update ...
    • Genetic characterization of the Patois Serogroup (Genus Orthobunyavirus; Family Peribunyaviridae) and evidence that Estero Real Virus is a member of the Genus Orthonairovirus 

      Aguilar, Patricia V; Souza, William Marciel de; Silvas, Jesus A; Wood, Thomas; Widen, Steven; Fumagalli, Marcílio Jorge; Nunes, Márcio Roberto Teixeira (American Society of Tropical Medicine and Hygiene, 2018)
      Estero Real virus (ERV) was isolated in 1980 from Ornithodoros tadaridae ticks collected in El Estero Real, Sancti Spiritus, Cuba. Antigenic characterization of the isolate based on serological methods found a relationship ...